NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,993.6 |
| Mean read quality |
10.8 |
| Median read length |
1,062.0 |
| Median read quality |
11.9 |
| Number of reads |
1,796,073.0 |
| Read length N50 |
11,085.0 |
| STDEV read length |
5,546.3 |
| Total bases |
7,172,747,432.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1789958 (99.7%) 7171.1Mb |
| >Q7 |
1786094 (99.4%) 7169.5Mb |
| >Q10 |
1498090 (83.4%) 6346.3Mb |
| >Q12 |
839197 (46.7%) 4048.7Mb |
| >Q15 |
15404 (0.9%) 20.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.5 (414) |
| 2 |
19.7 (404) |
| 3 |
19.5 (199) |
| 4 |
19.4 (233) |
| 5 |
19.2 (257) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
82075 (11.5) |
| 2 |
78162 (8.8) |
| 3 |
72240 (8.9) |
| 4 |
71986 (10.1) |
| 5 |
69041 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot