NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,333.7 |
| Mean read quality |
9.1 |
| Median read length |
1,062.0 |
| Median read quality |
9.7 |
| Number of reads |
2,225.0 |
| Read length N50 |
8,608.0 |
| STDEV read length |
4,888.4 |
| Total bases |
7,417,504.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2225 (100.0%) 7.4Mb |
| >Q7 |
2218 (99.7%) 7.4Mb |
| >Q10 |
991 (44.5%) 3.2Mb |
| >Q12 |
301 (13.5%) 0.8Mb |
| >Q15 |
19 (0.9%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.4 (189) |
| 2 |
16.6 (244) |
| 3 |
16.5 (236) |
| 4 |
15.8 (1018) |
| 5 |
15.7 (430) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
38041 (7.7) |
| 2 |
37647 (7.6) |
| 3 |
32218 (9.9) |
| 4 |
31777 (10.7) |
| 5 |
29142 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot