NanoPlot reports
Summary statistics prior to filtering
| General summary | |
|---|---|
| Mean read length | 1,210.0 |
| Mean read quality | 10.4 |
| Median read length | 607.0 |
| Median read quality | 12.3 |
| Number of reads | 29,236,544.0 |
| Read length N50 | 2,292.0 |
| STDEV read length | 1,827.2 |
| Total bases | 35,377,335,326.0 |
| Number, percentage and megabases of reads above quality cutoffs | |
| >Q5 | 29078536 (99.5%) 35208.6Mb |
| >Q7 | 27573727 (94.3%) 33423.9Mb |
| >Q10 | 21198737 (72.5%) 24968.6Mb |
| >Q12 | 15694576 (53.7%) 18588.7Mb |
| >Q15 | 4853904 (16.6%) 4855.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths | |
| 1 | 31.8 (14) |
| 2 | 31.5 (100) |
| 3 | 30.6 (98) |
| 4 | 30.4 (108) |
| 5 | 30.3 (175) |
| Top 5 longest reads and their mean basecall quality score | |
| 1 | 151805 (4.0) |
| 2 | 130471 (3.2) |
| 3 | 122830 (4.1) |
| 4 | 103049 (3.6) |
| 5 | 93666 (5.3) |
Summary statistics after filtering
| General summary | |
|---|---|
| Mean read length | 1,210.0 |
| Mean read quality | 10.4 |
| Median read length | 607.0 |
| Median read quality | 12.3 |
| Number of reads | 29,236,543.0 |
| Read length N50 | 2,292.0 |
| STDEV read length | 1,827.2 |
| Total bases | 35,377,335,312.0 |
| Number, percentage and megabases of reads above quality cutoffs | |
| >Q5 | 29078535 (99.5%) 35208.6Mb |
| >Q7 | 27573726 (94.3%) 33423.9Mb |
| >Q10 | 21198736 (72.5%) 24968.6Mb |
| >Q12 | 15694575 (53.7%) 18588.7Mb |
| >Q15 | 4853903 (16.6%) 4855.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths | |
| 1 | 31.5 (100) |
| 2 | 30.6 (98) |
| 3 | 30.4 (108) |
| 4 | 30.3 (175) |
| 5 | 30.0 (101) |
| Top 5 longest reads and their mean basecall quality score | |
| 1 | 151805 (4.0) |
| 2 | 130471 (3.2) |
| 3 | 122830 (4.1) |
| 4 | 103049 (3.6) |
| 5 | 93666 (5.3) |