NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,653.4 |
| Mean read quality |
9.2 |
| Median read length |
1,243.5 |
| Median read quality |
9.8 |
| Number of reads |
3,624.0 |
| Read length N50 |
9,821.0 |
| STDEV read length |
5,116.5 |
| Total bases |
13,240,025.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3624 (100.0%) 13.2Mb |
| >Q7 |
3615 (99.8%) 13.2Mb |
| >Q10 |
1667 (46.0%) 6.1Mb |
| >Q12 |
542 (15.0%) 1.6Mb |
| >Q15 |
35 (1.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (91) |
| 2 |
18.5 (81) |
| 3 |
18.5 (584) |
| 4 |
17.6 (124) |
| 5 |
17.0 (285) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
57555 (12.3) |
| 2 |
36094 (7.9) |
| 3 |
35115 (7.9) |
| 4 |
32222 (7.7) |
| 5 |
29891 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot