NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,229.6 |
| Mean read quality |
10.4 |
| Median read length |
576.0 |
| Median read quality |
12.3 |
| Number of reads |
4,995,752.0 |
| Read length N50 |
2,576.0 |
| STDEV read length |
2,076.4 |
| Total bases |
6,142,635,012.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4949768 (99.1%) 6095.9Mb |
| >Q7 |
4693139 (93.9%) 5821.1Mb |
| >Q10 |
3683746 (73.7%) 4638.1Mb |
| >Q12 |
2677637 (53.6%) 3435.6Mb |
| >Q15 |
747983 (15.0%) 803.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.2 (99) |
| 2 |
29.0 (28) |
| 3 |
28.8 (28) |
| 4 |
28.6 (151) |
| 5 |
28.5 (153) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
428475 (3.3) |
| 2 |
284591 (3.1) |
| 3 |
222751 (3.1) |
| 4 |
119095 (5.3) |
| 5 |
105751 (3.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot