NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,493.8 |
| Mean read quality |
10.3 |
| Median read length |
537.0 |
| Median read quality |
12.1 |
| Number of reads |
415,846.0 |
| Read length N50 |
4,318.0 |
| STDEV read length |
2,615.7 |
| Total bases |
621,208,972.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
413167 (99.4%) 617.9Mb |
| >Q7 |
390092 (93.8%) 591.2Mb |
| >Q10 |
297677 (71.6%) 469.4Mb |
| >Q12 |
213404 (51.3%) 352.2Mb |
| >Q15 |
57429 (13.8%) 80.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.4 (163) |
| 2 |
26.5 (68) |
| 3 |
25.8 (108) |
| 4 |
25.7 (128) |
| 5 |
25.7 (107) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
211874 (4.3) |
| 2 |
95511 (4.8) |
| 3 |
49408 (7.7) |
| 4 |
48879 (12.6) |
| 5 |
47709 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot