NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,821.5 |
| Mean read quality |
10.1 |
| Median read length |
1,527.0 |
| Median read quality |
11.1 |
| Number of reads |
175,688.0 |
| Read length N50 |
8,876.0 |
| STDEV read length |
5,045.4 |
| Total bases |
671,397,501.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
175687 (100.0%) 671.4Mb |
| >Q7 |
175457 (99.9%) 671.3Mb |
| >Q10 |
121648 (69.2%) 482.3Mb |
| >Q12 |
56531 (32.2%) 214.3Mb |
| >Q15 |
3453 (2.0%) 3.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.0 (119) |
| 2 |
23.2 (132) |
| 3 |
22.8 (170) |
| 4 |
21.6 (152) |
| 5 |
21.4 (182) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
88102 (10.9) |
| 2 |
84640 (9.4) |
| 3 |
68098 (13.3) |
| 4 |
64589 (8.1) |
| 5 |
59180 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot