NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,777.7 |
| Mean read quality |
10.0 |
| Median read length |
472.0 |
| Median read quality |
10.9 |
| Number of reads |
14,260.0 |
| Read length N50 |
6,557.0 |
| STDEV read length |
3,516.4 |
| Total bases |
25,349,819.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
14260 (100.0%) 25.3Mb |
| >Q7 |
14213 (99.7%) 25.3Mb |
| >Q10 |
9375 (65.7%) 17.7Mb |
| >Q12 |
4543 (31.9%) 8.2Mb |
| >Q15 |
393 (2.8%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.8 (47) |
| 2 |
23.5 (150) |
| 3 |
21.0 (130) |
| 4 |
20.6 (207) |
| 5 |
20.6 (421) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39355 (10.3) |
| 2 |
39172 (7.3) |
| 3 |
38745 (12.9) |
| 4 |
37071 (10.1) |
| 5 |
34906 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot