NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,503.9 |
| Mean read quality |
30.0 |
| Median read length |
3,332.0 |
| Median read quality |
30.0 |
| Number of reads |
59,902.0 |
| Read length N50 |
3,777.0 |
| STDEV read length |
1,266.7 |
| Total bases |
209,888,677.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
59902 (100.0%) 209.9Mb |
| >Q7 |
59902 (100.0%) 209.9Mb |
| >Q10 |
59902 (100.0%) 209.9Mb |
| >Q12 |
59902 (100.0%) 209.9Mb |
| >Q15 |
59902 (100.0%) 209.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.0 (5162) |
| 2 |
30.0 (3417) |
| 3 |
30.0 (4001) |
| 4 |
30.0 (2565) |
| 5 |
30.0 (5991) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10831 (30.0) |
| 2 |
9543 (30.0) |
| 3 |
9482 (30.0) |
| 4 |
8951 (30.0) |
| 5 |
8822 (30.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths