NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 99.3
Mean read quality 26.6
Median read length 100.0
Median read quality 30.0
Number of reads 150,383,514.0
Read length N50 100.0
STDEV read length 3.0
Total bases 14,937,135,527.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 150028577 (99.8%) 14903.6Mb
>Q7 150028577 (99.8%) 14903.6Mb
>Q10 150028577 (99.8%) 14903.6Mb
>Q12 150028577 (99.8%) 14903.6Mb
>Q15 150028577 (99.8%) 14903.6Mb
Top 5 highest mean basecall quality scores and their read lengths
1 30.0 (100)
2 30.0 (100)
3 30.0 (100)
4 30.0 (100)
5 30.0 (100)
Top 5 longest reads and their mean basecall quality score
1 100 (30.0)
2 100 (30.0)
3 100 (30.0)
4 100 (30.0)
5 100 (30.0)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot