NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,215.6 |
| Mean read quality |
9.9 |
| Median read length |
2,147.0 |
| Median read quality |
10.6 |
| Number of reads |
80,967.0 |
| Read length N50 |
2,861.0 |
| STDEV read length |
2,514.8 |
| Total bases |
179,393,827.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
80921 (99.9%) 179.4Mb |
| >Q7 |
80633 (99.6%) 179.4Mb |
| >Q10 |
59282 (73.2%) 135.9Mb |
| >Q12 |
8402 (10.4%) 14.6Mb |
| >Q15 |
1628 (2.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.0 (16) |
| 2 |
29.3 (16) |
| 3 |
28.9 (17) |
| 4 |
28.6 (45) |
| 5 |
28.4 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
81388 (12.5) |
| 2 |
79394 (13.5) |
| 3 |
77907 (13.0) |
| 4 |
74363 (13.8) |
| 5 |
74033 (9.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,215.7 |
| Mean read quality |
9.9 |
| Median read length |
2,147.0 |
| Median read quality |
10.6 |
| Number of reads |
80,966.0 |
| Read length N50 |
2,861.0 |
| STDEV read length |
2,514.8 |
| Total bases |
179,393,811.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
80920 (99.9%) 179.4Mb |
| >Q7 |
80632 (99.6%) 179.4Mb |
| >Q10 |
59281 (73.2%) 135.9Mb |
| >Q12 |
8401 (10.4%) 14.6Mb |
| >Q15 |
1627 (2.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.3 (16) |
| 2 |
28.9 (17) |
| 3 |
28.6 (45) |
| 4 |
28.4 (16) |
| 5 |
28.0 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
81388 (12.5) |
| 2 |
79394 (13.5) |
| 3 |
77907 (13.0) |
| 4 |
74363 (13.8) |
| 5 |
74033 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot