NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,503.5 |
| Mean read quality |
9.7 |
| Median read length |
2,986.0 |
| Median read quality |
10.3 |
| Number of reads |
30,425.0 |
| Read length N50 |
3,693.0 |
| STDEV read length |
3,988.7 |
| Total bases |
106,595,304.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
30420 (100.0%) 106.6Mb |
| >Q7 |
30363 (99.8%) 106.6Mb |
| >Q10 |
19342 (63.6%) 73.3Mb |
| >Q12 |
3913 (12.9%) 21.7Mb |
| >Q15 |
469 (1.5%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.7 (16) |
| 2 |
28.1 (16) |
| 3 |
26.8 (17) |
| 4 |
26.0 (25) |
| 5 |
25.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69827 (13.0) |
| 2 |
69019 (12.0) |
| 3 |
63238 (7.8) |
| 4 |
61498 (7.7) |
| 5 |
60805 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot