NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,484.0 |
| Mean read quality |
10.0 |
| Median read length |
1,110.0 |
| Median read quality |
10.8 |
| Number of reads |
55,366.0 |
| Read length N50 |
1,912.0 |
| STDEV read length |
2,887.0 |
| Total bases |
82,161,191.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
55280 (99.8%) 82.1Mb |
| >Q7 |
54729 (98.8%) 81.9Mb |
| >Q10 |
42817 (77.3%) 67.7Mb |
| >Q12 |
6009 (10.9%) 18.1Mb |
| >Q15 |
1088 (2.0%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.6 (17) |
| 2 |
30.4 (16) |
| 3 |
29.8 (123) |
| 4 |
29.6 (19) |
| 5 |
29.4 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79540 (7.4) |
| 2 |
58408 (9.6) |
| 3 |
57690 (8.6) |
| 4 |
56493 (14.5) |
| 5 |
54562 (12.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,484.0 |
| Mean read quality |
10.0 |
| Median read length |
1,110.0 |
| Median read quality |
10.8 |
| Number of reads |
55,364.0 |
| Read length N50 |
1,912.0 |
| STDEV read length |
2,887.0 |
| Total bases |
82,161,158.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
55278 (99.8%) 82.1Mb |
| >Q7 |
54727 (98.8%) 81.9Mb |
| >Q10 |
42815 (77.3%) 67.7Mb |
| >Q12 |
6007 (10.9%) 18.1Mb |
| >Q15 |
1086 (2.0%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.8 (123) |
| 2 |
29.6 (19) |
| 3 |
29.4 (16) |
| 4 |
28.9 (16) |
| 5 |
28.3 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79540 (7.4) |
| 2 |
58408 (9.6) |
| 3 |
57690 (8.6) |
| 4 |
56493 (14.5) |
| 5 |
54562 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot