NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,816.2 |
| Mean read quality |
10.2 |
| Median read length |
2,382.0 |
| Median read quality |
10.9 |
| Number of reads |
32,351.0 |
| Read length N50 |
2,841.0 |
| STDEV read length |
3,944.2 |
| Total bases |
91,108,293.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
32347 (100.0%) 91.1Mb |
| >Q7 |
32299 (99.8%) 91.1Mb |
| >Q10 |
26640 (82.3%) 76.5Mb |
| >Q12 |
2092 (6.5%) 14.2Mb |
| >Q15 |
222 (0.7%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.6 (16) |
| 2 |
29.3 (26) |
| 3 |
28.9 (23) |
| 4 |
28.2 (16) |
| 5 |
27.5 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
76261 (10.9) |
| 2 |
74026 (9.9) |
| 3 |
73400 (11.8) |
| 4 |
70824 (14.6) |
| 5 |
69516 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot