NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
942.6 |
| Mean read quality |
9.3 |
| Median read length |
317.0 |
| Median read quality |
10.0 |
| Number of reads |
34,871.0 |
| Read length N50 |
2,233.0 |
| STDEV read length |
1,086.8 |
| Total bases |
32,869,674.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
34702 (99.5%) 32.9Mb |
| >Q7 |
33743 (96.8%) 32.8Mb |
| >Q10 |
17366 (49.8%) 13.6Mb |
| >Q12 |
5704 (16.4%) 0.6Mb |
| >Q15 |
1480 (4.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.5 (18) |
| 2 |
28.8 (18) |
| 3 |
28.5 (17) |
| 4 |
28.3 (20) |
| 5 |
27.8 (23) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7794 (7.6) |
| 2 |
7550 (9.7) |
| 3 |
6931 (8.0) |
| 4 |
6651 (8.5) |
| 5 |
6475 (8.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
942.6 |
| Mean read quality |
9.3 |
| Median read length |
317.0 |
| Median read quality |
10.0 |
| Number of reads |
34,870.0 |
| Read length N50 |
2,233.0 |
| STDEV read length |
1,086.8 |
| Total bases |
32,869,656.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
34701 (99.5%) 32.9Mb |
| >Q7 |
33742 (96.8%) 32.8Mb |
| >Q10 |
17365 (49.8%) 13.6Mb |
| >Q12 |
5703 (16.4%) 0.6Mb |
| >Q15 |
1479 (4.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.8 (18) |
| 2 |
28.5 (17) |
| 3 |
28.3 (20) |
| 4 |
27.8 (23) |
| 5 |
27.2 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7794 (7.6) |
| 2 |
7550 (9.7) |
| 3 |
6931 (8.0) |
| 4 |
6651 (8.5) |
| 5 |
6475 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot