NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,257.8 |
| Mean read quality |
9.6 |
| Median read length |
7,124.0 |
| Median read quality |
10.5 |
| Number of reads |
875,460.0 |
| Read length N50 |
8,094.0 |
| STDEV read length |
3,287.3 |
| Total bases |
6,353,898,783.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
875460 (100.0%) 6353.9Mb |
| >Q7 |
875460 (100.0%) 6353.9Mb |
| >Q10 |
530476 (60.6%) 3821.5Mb |
| >Q12 |
150002 (17.1%) 1076.6Mb |
| >Q15 |
149 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2815) |
| 2 |
16.3 (7479) |
| 3 |
16.2 (7267) |
| 4 |
16.2 (2100) |
| 5 |
16.1 (4936) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55794 (7.2) |
| 2 |
51357 (9.3) |
| 3 |
50749 (11.3) |
| 4 |
50457 (11.3) |
| 5 |
49110 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot