NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,429.7 |
| Mean read quality |
11.7 |
| Median read length |
5,046.0 |
| Median read quality |
13.0 |
| Number of reads |
883,117.0 |
| Read length N50 |
6,320.0 |
| STDEV read length |
2,567.5 |
| Total bases |
4,795,082,219.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
883117 (100.0%) 4795.1Mb |
| >Q7 |
883117 (100.0%) 4795.1Mb |
| >Q10 |
762115 (86.3%) 4127.5Mb |
| >Q12 |
568271 (64.3%) 3073.2Mb |
| >Q15 |
162111 (18.4%) 851.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.4 (5198) |
| 2 |
21.3 (7936) |
| 3 |
21.3 (5461) |
| 4 |
20.8 (4890) |
| 5 |
20.7 (3712) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43432 (13.3) |
| 2 |
40472 (8.8) |
| 3 |
39680 (10.6) |
| 4 |
35520 (8.3) |
| 5 |
32236 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot