NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,247.5 |
| Mean read quality |
11.0 |
| Median read length |
5,440.0 |
| Median read quality |
12.2 |
| Number of reads |
613,217.0 |
| Read length N50 |
7,773.0 |
| STDEV read length |
3,616.9 |
| Total bases |
3,831,057,232.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
613217 (100.0%) 3831.1Mb |
| >Q7 |
613217 (100.0%) 3831.1Mb |
| >Q10 |
481308 (78.5%) 3005.4Mb |
| >Q12 |
327721 (53.4%) 2040.3Mb |
| >Q15 |
87820 (14.3%) 523.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.8 (2241) |
| 2 |
21.2 (3141) |
| 3 |
20.5 (5633) |
| 4 |
20.4 (4083) |
| 5 |
20.4 (11588) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62834 (8.2) |
| 2 |
60678 (7.8) |
| 3 |
53866 (13.1) |
| 4 |
52140 (11.3) |
| 5 |
45968 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot