NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,079.9 |
| Mean read quality |
11.4 |
| Median read length |
4,341.0 |
| Median read quality |
12.9 |
| Number of reads |
966,152.0 |
| Read length N50 |
6,071.0 |
| STDEV read length |
2,763.4 |
| Total bases |
4,907,946,914.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
966152 (100.0%) 4907.9Mb |
| >Q7 |
966152 (100.0%) 4907.9Mb |
| >Q10 |
799393 (82.7%) 4039.5Mb |
| >Q12 |
607755 (62.9%) 3078.1Mb |
| >Q15 |
165710 (17.2%) 812.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.3 (2044) |
| 2 |
21.1 (5109) |
| 3 |
20.8 (2008) |
| 4 |
20.6 (2764) |
| 5 |
20.6 (8203) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40532 (7.7) |
| 2 |
37410 (13.7) |
| 3 |
36944 (8.1) |
| 4 |
35256 (10.0) |
| 5 |
34857 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot