NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,848.4 |
| Mean read quality |
11.4 |
| Median read length |
4,135.0 |
| Median read quality |
13.0 |
| Number of reads |
795,055.0 |
| Read length N50 |
5,780.0 |
| STDEV read length |
2,580.5 |
| Total bases |
3,854,715,618.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
795055 (100.0%) 3854.7Mb |
| >Q7 |
795055 (100.0%) 3854.7Mb |
| >Q10 |
648890 (81.6%) 3126.4Mb |
| >Q12 |
497813 (62.6%) 2408.4Mb |
| >Q15 |
154531 (19.4%) 741.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.4 (3302) |
| 2 |
20.9 (2158) |
| 3 |
20.6 (3188) |
| 4 |
20.5 (2983) |
| 5 |
20.5 (4269) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37980 (7.5) |
| 2 |
37758 (11.3) |
| 3 |
36400 (13.9) |
| 4 |
35419 (7.5) |
| 5 |
35256 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot