NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,376.5 |
| Mean read quality |
9.9 |
| Median read length |
7,417.0 |
| Median read quality |
10.8 |
| Number of reads |
624,725.0 |
| Read length N50 |
8,424.0 |
| STDEV read length |
3,432.0 |
| Total bases |
4,608,258,609.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
624725 (100.0%) 4608.3Mb |
| >Q7 |
624725 (100.0%) 4608.3Mb |
| >Q10 |
419292 (67.1%) 3050.2Mb |
| >Q12 |
133579 (21.4%) 961.6Mb |
| >Q15 |
79 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2581) |
| 2 |
16.0 (3602) |
| 3 |
15.9 (2599) |
| 4 |
15.9 (6067) |
| 5 |
15.9 (3529) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70096 (9.4) |
| 2 |
50100 (8.2) |
| 3 |
48081 (11.1) |
| 4 |
47800 (11.0) |
| 5 |
44249 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot