NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,501.5 |
| Mean read quality |
9.9 |
| Median read length |
8,867.0 |
| Median read quality |
10.8 |
| Number of reads |
455,584.0 |
| Read length N50 |
10,555.0 |
| STDEV read length |
4,470.1 |
| Total bases |
4,328,717,679.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
455584 (100.0%) 4328.7Mb |
| >Q7 |
455582 (100.0%) 4328.7Mb |
| >Q10 |
306872 (67.4%) 2890.3Mb |
| >Q12 |
96074 (21.1%) 895.8Mb |
| >Q15 |
45 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (2754) |
| 2 |
15.9 (3279) |
| 3 |
15.8 (8992) |
| 4 |
15.7 (8073) |
| 5 |
15.7 (2007) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
76392 (8.4) |
| 2 |
70960 (8.4) |
| 3 |
69529 (12.5) |
| 4 |
65147 (10.3) |
| 5 |
58329 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot