NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,609.6 |
| Mean read quality |
9.6 |
| Median read length |
7,290.0 |
| Median read quality |
10.5 |
| Number of reads |
606,774.0 |
| Read length N50 |
8,640.0 |
| STDEV read length |
3,639.0 |
| Total bases |
4,617,307,533.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
606774 (100.0%) 4617.3Mb |
| >Q7 |
606773 (100.0%) 4617.3Mb |
| >Q10 |
368889 (60.8%) 2797.6Mb |
| >Q12 |
102188 (16.8%) 766.7Mb |
| >Q15 |
131 (0.0%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (9843) |
| 2 |
15.9 (7045) |
| 3 |
15.8 (8732) |
| 4 |
15.8 (2927) |
| 5 |
15.8 (2296) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52874 (8.0) |
| 2 |
51336 (11.3) |
| 3 |
47528 (10.1) |
| 4 |
46747 (7.3) |
| 5 |
45993 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot