NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,467.5 |
| Mean read quality |
9.4 |
| Median read length |
6,000.0 |
| Median read quality |
10.2 |
| Number of reads |
893,196.0 |
| Read length N50 |
7,695.0 |
| STDEV read length |
3,257.9 |
| Total bases |
5,776,751,086.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
893196 (100.0%) 5776.8Mb |
| >Q7 |
893195 (100.0%) 5776.7Mb |
| >Q10 |
479567 (53.7%) 3075.4Mb |
| >Q12 |
106531 (11.9%) 654.5Mb |
| >Q15 |
56 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2507) |
| 2 |
16.0 (2616) |
| 3 |
15.7 (3964) |
| 4 |
15.7 (2062) |
| 5 |
15.6 (3855) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58707 (7.5) |
| 2 |
43730 (8.7) |
| 3 |
39776 (9.3) |
| 4 |
39406 (8.6) |
| 5 |
38881 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot