NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,660.5 |
| Mean read quality |
9.9 |
| Median read length |
5,992.0 |
| Median read quality |
10.8 |
| Number of reads |
656,976.0 |
| Read length N50 |
7,335.0 |
| STDEV read length |
3,099.2 |
| Total bases |
4,375,802,117.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
656976 (100.0%) 4375.8Mb |
| >Q7 |
656976 (100.0%) 4375.8Mb |
| >Q10 |
443133 (67.5%) 2912.4Mb |
| >Q12 |
137007 (20.9%) 885.0Mb |
| >Q15 |
117 (0.0%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (2048) |
| 2 |
15.8 (3245) |
| 3 |
15.8 (7209) |
| 4 |
15.8 (8207) |
| 5 |
15.7 (2738) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54200 (9.6) |
| 2 |
51312 (9.2) |
| 3 |
48093 (9.3) |
| 4 |
44840 (11.3) |
| 5 |
41798 (7.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot