NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,499.7 |
| Mean read quality |
9.7 |
| Median read length |
8,654.0 |
| Median read quality |
10.5 |
| Number of reads |
519,160.0 |
| Read length N50 |
10,705.0 |
| STDEV read length |
4,887.2 |
| Total bases |
4,931,881,706.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
519160 (100.0%) 4931.9Mb |
| >Q7 |
519160 (100.0%) 4931.9Mb |
| >Q10 |
320258 (61.7%) 3044.2Mb |
| >Q12 |
87193 (16.8%) 820.5Mb |
| >Q15 |
46 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (2057) |
| 2 |
15.8 (2003) |
| 3 |
15.8 (4760) |
| 4 |
15.8 (8326) |
| 5 |
15.7 (7223) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
73606 (8.3) |
| 2 |
71749 (8.0) |
| 3 |
65406 (9.9) |
| 4 |
63364 (8.0) |
| 5 |
63019 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot