NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,378.5 |
| Mean read quality |
9.6 |
| Median read length |
7,421.0 |
| Median read quality |
10.4 |
| Number of reads |
593,468.0 |
| Read length N50 |
9,022.0 |
| STDEV read length |
3,702.7 |
| Total bases |
4,378,932,813.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
593468 (100.0%) 4378.9Mb |
| >Q7 |
593466 (100.0%) 4378.9Mb |
| >Q10 |
353793 (59.6%) 2592.4Mb |
| >Q12 |
76363 (12.9%) 535.9Mb |
| >Q15 |
35 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (3170) |
| 2 |
16.2 (6676) |
| 3 |
16.1 (9399) |
| 4 |
15.8 (2029) |
| 5 |
15.8 (2676) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46385 (10.4) |
| 2 |
44329 (7.7) |
| 3 |
42597 (9.1) |
| 4 |
41549 (8.6) |
| 5 |
41443 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot