NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,941.1 |
| Mean read quality |
9.6 |
| Median read length |
7,296.0 |
| Median read quality |
10.4 |
| Number of reads |
657,208.0 |
| Read length N50 |
9,837.0 |
| STDEV read length |
4,446.5 |
| Total bases |
5,218,953,267.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
657208 (100.0%) 5219.0Mb |
| >Q7 |
657207 (100.0%) 5219.0Mb |
| >Q10 |
393729 (59.9%) 3117.0Mb |
| >Q12 |
96262 (14.6%) 732.7Mb |
| >Q15 |
47 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (5052) |
| 2 |
15.8 (7890) |
| 3 |
15.7 (3511) |
| 4 |
15.6 (11484) |
| 5 |
15.6 (10174) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
77168 (11.7) |
| 2 |
67805 (12.4) |
| 3 |
65764 (8.6) |
| 4 |
55646 (8.3) |
| 5 |
52441 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot