NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,889.8 |
| Mean read quality |
9.7 |
| Median read length |
9,116.0 |
| Median read quality |
10.5 |
| Number of reads |
615,572.0 |
| Read length N50 |
11,149.0 |
| STDEV read length |
4,682.0 |
| Total bases |
6,087,894,005.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
615572 (100.0%) 6087.9Mb |
| >Q7 |
615572 (100.0%) 6087.9Mb |
| >Q10 |
379867 (61.7%) 3765.6Mb |
| >Q12 |
103758 (16.9%) 1018.5Mb |
| >Q15 |
37 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (8236) |
| 2 |
15.6 (7352) |
| 3 |
15.5 (13785) |
| 4 |
15.5 (2976) |
| 5 |
15.4 (3822) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
68807 (7.5) |
| 2 |
65434 (7.7) |
| 3 |
59153 (10.3) |
| 4 |
58169 (12.5) |
| 5 |
58150 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot