NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,786.8 |
| Mean read quality |
9.5 |
| Median read length |
6,066.0 |
| Median read quality |
10.4 |
| Number of reads |
511,893.0 |
| Read length N50 |
8,394.0 |
| STDEV read length |
3,866.3 |
| Total bases |
3,474,131,119.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
511893 (100.0%) 3474.1Mb |
| >Q7 |
511893 (100.0%) 3474.1Mb |
| >Q10 |
298706 (58.4%) 2004.8Mb |
| >Q12 |
76359 (14.9%) 498.8Mb |
| >Q15 |
77 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (7201) |
| 2 |
16.5 (5015) |
| 3 |
16.2 (4749) |
| 4 |
16.1 (2164) |
| 5 |
15.9 (2889) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
57134 (13.0) |
| 2 |
53726 (8.4) |
| 3 |
51685 (9.6) |
| 4 |
51238 (13.0) |
| 5 |
50714 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot