NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,409.8 |
| Mean read quality |
9.6 |
| Median read length |
5,144.0 |
| Median read quality |
10.4 |
| Number of reads |
931,981.0 |
| Read length N50 |
6,200.0 |
| STDEV read length |
2,510.1 |
| Total bases |
5,041,854,799.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
931981 (100.0%) 5041.9Mb |
| >Q7 |
931981 (100.0%) 5041.9Mb |
| >Q10 |
561942 (60.3%) 3016.4Mb |
| >Q12 |
122686 (13.2%) 642.4Mb |
| >Q15 |
70 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (6673) |
| 2 |
16.2 (2703) |
| 3 |
16.0 (5087) |
| 4 |
15.9 (6406) |
| 5 |
15.7 (2179) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54337 (8.5) |
| 2 |
43145 (10.5) |
| 3 |
41660 (10.6) |
| 4 |
40846 (9.4) |
| 5 |
40713 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot