NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,693.6 |
| Mean read quality |
9.6 |
| Median read length |
7,360.0 |
| Median read quality |
10.5 |
| Number of reads |
798,415.0 |
| Read length N50 |
8,893.0 |
| STDEV read length |
4,021.0 |
| Total bases |
6,142,718,187.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
798415 (100.0%) 6142.7Mb |
| >Q7 |
798415 (100.0%) 6142.7Mb |
| >Q10 |
486541 (60.9%) 3731.7Mb |
| >Q12 |
138494 (17.3%) 1049.3Mb |
| >Q15 |
122 (0.0%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (9148) |
| 2 |
15.8 (3172) |
| 3 |
15.7 (2388) |
| 4 |
15.7 (2403) |
| 5 |
15.6 (6803) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
72016 (7.7) |
| 2 |
63021 (9.8) |
| 3 |
56877 (8.0) |
| 4 |
52722 (7.8) |
| 5 |
51647 (7.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot