NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,179.9 |
| Mean read quality |
9.7 |
| Median read length |
9,083.0 |
| Median read quality |
10.5 |
| Number of reads |
399,170.0 |
| Read length N50 |
10,207.0 |
| STDEV read length |
3,790.3 |
| Total bases |
3,664,329,704.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
399170 (100.0%) 3664.3Mb |
| >Q7 |
399170 (100.0%) 3664.3Mb |
| >Q10 |
249625 (62.5%) 2281.5Mb |
| >Q12 |
61420 (15.4%) 544.0Mb |
| >Q15 |
28 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (4496) |
| 2 |
15.5 (8703) |
| 3 |
15.5 (8417) |
| 4 |
15.5 (2362) |
| 5 |
15.3 (9048) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52586 (10.3) |
| 2 |
52485 (7.3) |
| 3 |
50723 (11.7) |
| 4 |
48023 (8.2) |
| 5 |
46682 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot