NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,252.9 |
| Mean read quality |
9.6 |
| Median read length |
7,874.0 |
| Median read quality |
10.5 |
| Number of reads |
562,128.0 |
| Read length N50 |
9,261.0 |
| STDEV read length |
3,882.5 |
| Total bases |
4,639,181,078.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
562128 (100.0%) 4639.2Mb |
| >Q7 |
562127 (100.0%) 4639.2Mb |
| >Q10 |
342832 (61.0%) 2825.0Mb |
| >Q12 |
102272 (18.2%) 838.5Mb |
| >Q15 |
73 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (7114) |
| 2 |
15.8 (4521) |
| 3 |
15.7 (2297) |
| 4 |
15.7 (2122) |
| 5 |
15.5 (2003) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
74668 (9.2) |
| 2 |
56295 (9.0) |
| 3 |
56225 (7.2) |
| 4 |
52615 (8.8) |
| 5 |
48163 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot