NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,876.7 |
| Mean read quality |
9.4 |
| Median read length |
6,815.0 |
| Median read quality |
10.4 |
| Number of reads |
624,784.0 |
| Read length N50 |
9,271.0 |
| STDEV read length |
4,659.6 |
| Total bases |
4,921,240,263.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
624585 (100.0%) 4919.9Mb |
| >Q7 |
601676 (96.3%) 4742.5Mb |
| >Q10 |
369299 (59.1%) 2872.3Mb |
| >Q12 |
90500 (14.5%) 679.3Mb |
| >Q15 |
37 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (3433) |
| 2 |
15.7 (2651) |
| 3 |
15.6 (2825) |
| 4 |
15.6 (3438) |
| 5 |
15.6 (2083) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
131736 (9.4) |
| 2 |
71683 (7.5) |
| 3 |
68294 (11.2) |
| 4 |
67766 (8.3) |
| 5 |
62629 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot