NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,971.9 |
| Mean read quality |
9.5 |
| Median read length |
8,409.0 |
| Median read quality |
10.5 |
| Number of reads |
597,966.0 |
| Read length N50 |
9,697.0 |
| STDEV read length |
3,980.2 |
| Total bases |
5,364,914,174.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
597784 (100.0%) 5363.4Mb |
| >Q7 |
578794 (96.8%) 5196.0Mb |
| >Q10 |
363931 (60.9%) 3229.3Mb |
| >Q12 |
92794 (15.5%) 805.6Mb |
| >Q15 |
28 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (13794) |
| 2 |
15.5 (15627) |
| 3 |
15.5 (8243) |
| 4 |
15.4 (3709) |
| 5 |
15.4 (7907) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
149834 (9.1) |
| 2 |
87167 (9.7) |
| 3 |
74923 (9.5) |
| 4 |
74621 (8.3) |
| 5 |
64646 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot