NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,104.7 |
| Mean read quality |
9.6 |
| Median read length |
9,319.0 |
| Median read quality |
10.6 |
| Number of reads |
509,483.0 |
| Read length N50 |
11,112.0 |
| STDEV read length |
4,639.7 |
| Total bases |
5,148,177,351.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
509374 (100.0%) 5147.1Mb |
| >Q7 |
495222 (97.2%) 5008.7Mb |
| >Q10 |
318962 (62.6%) 3214.2Mb |
| >Q12 |
86773 (17.0%) 859.4Mb |
| >Q15 |
52 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (16355) |
| 2 |
16.2 (8379) |
| 3 |
16.1 (10589) |
| 4 |
15.9 (10138) |
| 5 |
15.9 (9208) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
120929 (9.6) |
| 2 |
114554 (10.6) |
| 3 |
81005 (10.1) |
| 4 |
74731 (8.5) |
| 5 |
72725 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot