NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,195.7 |
| Mean read quality |
9.5 |
| Median read length |
9,361.0 |
| Median read quality |
10.5 |
| Number of reads |
538,925.0 |
| Read length N50 |
11,024.0 |
| STDEV read length |
4,320.4 |
| Total bases |
5,494,708,770.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
538791 (100.0%) 5493.5Mb |
| >Q7 |
523680 (97.2%) 5342.7Mb |
| >Q10 |
331230 (61.5%) 3362.5Mb |
| >Q12 |
78194 (14.5%) 778.3Mb |
| >Q15 |
45 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (3445) |
| 2 |
16.0 (9572) |
| 3 |
15.7 (10562) |
| 4 |
15.7 (9606) |
| 5 |
15.5 (2016) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
123310 (9.5) |
| 2 |
77068 (10.6) |
| 3 |
74644 (9.6) |
| 4 |
64949 (9.1) |
| 5 |
60862 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot