NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,797.2 |
| Mean read quality |
11.4 |
| Median read length |
4,120.0 |
| Median read quality |
12.8 |
| Number of reads |
724,945.0 |
| Read length N50 |
5,694.0 |
| STDEV read length |
2,533.5 |
| Total bases |
3,477,722,170.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
724945 (100.0%) 3477.7Mb |
| >Q7 |
724945 (100.0%) 3477.7Mb |
| >Q10 |
602119 (83.1%) 2872.3Mb |
| >Q12 |
442035 (61.0%) 2109.0Mb |
| >Q15 |
128062 (17.7%) 603.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.6 (3683) |
| 2 |
21.1 (3186) |
| 3 |
21.1 (4100) |
| 4 |
21.0 (3047) |
| 5 |
20.9 (5842) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
240954 (7.3) |
| 2 |
63824 (8.0) |
| 3 |
62617 (7.8) |
| 4 |
44307 (7.9) |
| 5 |
39761 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot