NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,846.4 |
| Mean read quality |
9.4 |
| Median read length |
6,070.0 |
| Median read quality |
10.5 |
| Number of reads |
881,434.0 |
| Read length N50 |
7,662.0 |
| STDEV read length |
3,581.7 |
| Total bases |
6,034,659,638.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
881210 (100.0%) 6033.2Mb |
| >Q7 |
850996 (96.5%) 5825.6Mb |
| >Q10 |
532239 (60.4%) 3580.6Mb |
| >Q12 |
144778 (16.4%) 963.7Mb |
| >Q15 |
134 (0.0%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (6547) |
| 2 |
16.3 (6715) |
| 3 |
16.2 (2868) |
| 4 |
16.1 (2011) |
| 5 |
15.9 (8502) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
116506 (10.3) |
| 2 |
93542 (8.4) |
| 3 |
90766 (10.2) |
| 4 |
82424 (9.4) |
| 5 |
75216 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot