NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,738.6 |
| Mean read quality |
9.7 |
| Median read length |
9,937.0 |
| Median read quality |
10.7 |
| Number of reads |
433,706.0 |
| Read length N50 |
11,700.0 |
| STDEV read length |
4,674.5 |
| Total bases |
4,657,400,732.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
433706 (100.0%) 4657.4Mb |
| >Q7 |
433706 (100.0%) 4657.4Mb |
| >Q10 |
277884 (64.1%) 2975.2Mb |
| >Q12 |
79032 (18.2%) 833.8Mb |
| >Q15 |
52 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (13587) |
| 2 |
15.9 (2539) |
| 3 |
15.9 (11509) |
| 4 |
15.8 (2179) |
| 5 |
15.7 (3374) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
67457 (8.1) |
| 2 |
67190 (9.2) |
| 3 |
64654 (8.9) |
| 4 |
63945 (7.7) |
| 5 |
62825 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot