NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,663.6 |
| Mean read quality |
9.9 |
| Median read length |
9,981.0 |
| Median read quality |
10.8 |
| Number of reads |
410,743.0 |
| Read length N50 |
11,561.0 |
| STDEV read length |
4,464.2 |
| Total bases |
4,380,009,550.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
410743 (100.0%) 4380.0Mb |
| >Q7 |
410743 (100.0%) 4380.0Mb |
| >Q10 |
274192 (66.8%) 2915.9Mb |
| >Q12 |
84753 (20.6%) 889.2Mb |
| >Q15 |
58 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (3598) |
| 2 |
15.8 (11048) |
| 3 |
15.7 (8989) |
| 4 |
15.7 (8714) |
| 5 |
15.6 (2675) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61641 (8.7) |
| 2 |
60551 (11.6) |
| 3 |
59115 (10.1) |
| 4 |
56914 (9.1) |
| 5 |
56212 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot