NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,481.8 |
| Mean read quality |
9.7 |
| Median read length |
8,233.0 |
| Median read quality |
10.7 |
| Number of reads |
640,076.0 |
| Read length N50 |
9,418.0 |
| STDEV read length |
3,781.0 |
| Total bases |
5,428,970,739.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
640076 (100.0%) 5429.0Mb |
| >Q7 |
640076 (100.0%) 5429.0Mb |
| >Q10 |
408767 (63.9%) 3442.9Mb |
| >Q12 |
122770 (19.2%) 1019.1Mb |
| >Q15 |
185 (0.0%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2538) |
| 2 |
16.2 (5948) |
| 3 |
16.1 (2421) |
| 4 |
16.1 (8238) |
| 5 |
16.0 (2113) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
72340 (7.7) |
| 2 |
69428 (8.0) |
| 3 |
57564 (9.0) |
| 4 |
50792 (8.4) |
| 5 |
49380 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot