NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,602.1 |
| Mean read quality |
9.7 |
| Median read length |
9,100.0 |
| Median read quality |
10.6 |
| Number of reads |
483,718.0 |
| Read length N50 |
10,513.0 |
| STDEV read length |
4,059.9 |
| Total bases |
4,644,693,833.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
483718 (100.0%) 4644.7Mb |
| >Q7 |
483718 (100.0%) 4644.7Mb |
| >Q10 |
309660 (64.0%) 2956.2Mb |
| >Q12 |
85267 (17.6%) 802.6Mb |
| >Q15 |
36 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (11990) |
| 2 |
15.8 (8576) |
| 3 |
15.8 (2169) |
| 4 |
15.7 (3966) |
| 5 |
15.7 (11742) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
53564 (8.5) |
| 2 |
51463 (10.8) |
| 3 |
49925 (8.5) |
| 4 |
49104 (8.1) |
| 5 |
48967 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot