NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,158.4 |
| Mean read quality |
11.4 |
| Median read length |
5,602.0 |
| Median read quality |
12.6 |
| Number of reads |
693,815.0 |
| Read length N50 |
7,378.0 |
| STDEV read length |
3,203.2 |
| Total bases |
4,272,784,956.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
693815 (100.0%) 4272.8Mb |
| >Q7 |
693815 (100.0%) 4272.8Mb |
| >Q10 |
578957 (83.4%) 3546.0Mb |
| >Q12 |
415588 (59.9%) 2544.3Mb |
| >Q15 |
99624 (14.4%) 590.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.6 (2155) |
| 2 |
20.7 (7298) |
| 3 |
20.7 (9657) |
| 4 |
20.3 (5572) |
| 5 |
20.2 (2146) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55044 (13.6) |
| 2 |
45550 (8.3) |
| 3 |
45359 (8.5) |
| 4 |
43423 (14.0) |
| 5 |
42716 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot