NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,782.0 |
| Mean read quality |
9.7 |
| Median read length |
7,640.0 |
| Median read quality |
10.6 |
| Number of reads |
564,707.0 |
| Read length N50 |
8,705.0 |
| STDEV read length |
3,504.4 |
| Total bases |
4,394,546,662.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
564707 (100.0%) 4394.5Mb |
| >Q7 |
564705 (100.0%) 4394.5Mb |
| >Q10 |
356473 (63.1%) 2744.6Mb |
| >Q12 |
97220 (17.2%) 737.9Mb |
| >Q15 |
57 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (6800) |
| 2 |
15.7 (2515) |
| 3 |
15.7 (3778) |
| 4 |
15.6 (12695) |
| 5 |
15.6 (9645) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70942 (9.0) |
| 2 |
50761 (9.5) |
| 3 |
50089 (10.5) |
| 4 |
47487 (11.1) |
| 5 |
44526 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot