NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,604.4 |
| Mean read quality |
9.7 |
| Median read length |
8,354.0 |
| Median read quality |
10.6 |
| Number of reads |
471,487.0 |
| Read length N50 |
9,483.0 |
| STDEV read length |
3,603.6 |
| Total bases |
4,056,850,065.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
471487 (100.0%) 4056.9Mb |
| >Q7 |
471487 (100.0%) 4056.9Mb |
| >Q10 |
299778 (63.6%) 2563.6Mb |
| >Q12 |
83438 (17.7%) 704.5Mb |
| >Q15 |
68 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (2375) |
| 2 |
15.7 (2775) |
| 3 |
15.7 (2322) |
| 4 |
15.6 (8243) |
| 5 |
15.6 (7465) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52825 (7.7) |
| 2 |
50615 (11.8) |
| 3 |
49495 (8.3) |
| 4 |
48871 (8.0) |
| 5 |
46694 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot