NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,305.2 |
| Mean read quality |
9.6 |
| Median read length |
8,225.0 |
| Median read quality |
10.6 |
| Number of reads |
688,443.0 |
| Read length N50 |
9,495.0 |
| STDEV read length |
3,931.8 |
| Total bases |
5,717,663,844.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
688271 (100.0%) 5716.3Mb |
| >Q7 |
667175 (96.9%) 5543.0Mb |
| >Q10 |
432417 (62.8%) 3566.3Mb |
| >Q12 |
127659 (18.5%) 1033.3Mb |
| >Q15 |
290 (0.0%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (2560) |
| 2 |
16.6 (2337) |
| 3 |
16.6 (8785) |
| 4 |
16.5 (7709) |
| 5 |
16.4 (15493) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
222633 (6.8) |
| 2 |
165801 (9.9) |
| 3 |
80289 (10.4) |
| 4 |
72474 (5.4) |
| 5 |
70195 (7.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot