NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,771.2 |
| Mean read quality |
9.8 |
| Median read length |
9,204.0 |
| Median read quality |
10.7 |
| Number of reads |
451,209.0 |
| Read length N50 |
11,525.0 |
| STDEV read length |
5,095.7 |
| Total bases |
4,408,839,677.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
451209 (100.0%) 4408.8Mb |
| >Q7 |
451209 (100.0%) 4408.8Mb |
| >Q10 |
295067 (65.4%) 2874.3Mb |
| >Q12 |
77092 (17.1%) 726.0Mb |
| >Q15 |
30 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (2261) |
| 2 |
15.8 (7078) |
| 3 |
15.8 (2062) |
| 4 |
15.7 (2035) |
| 5 |
15.7 (2418) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
72604 (8.3) |
| 2 |
62330 (11.3) |
| 3 |
55096 (8.4) |
| 4 |
54739 (11.2) |
| 5 |
54726 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot