NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,082.3 |
| Mean read quality |
9.6 |
| Median read length |
3,906.0 |
| Median read quality |
10.4 |
| Number of reads |
432,172.0 |
| Read length N50 |
6,252.0 |
| STDEV read length |
3,318.7 |
| Total bases |
2,196,435,675.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
432172 (100.0%) 2196.4Mb |
| >Q7 |
432171 (100.0%) 2196.4Mb |
| >Q10 |
254782 (59.0%) 1279.4Mb |
| >Q12 |
68750 (15.9%) 334.7Mb |
| >Q15 |
102 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (2490) |
| 2 |
16.2 (2047) |
| 3 |
16.0 (3455) |
| 4 |
16.0 (2497) |
| 5 |
15.9 (2688) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47783 (12.7) |
| 2 |
47485 (12.8) |
| 3 |
47341 (10.7) |
| 4 |
42984 (10.1) |
| 5 |
42761 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot